PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g008500.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 215aa    MW: 23750.5 Da    PI: 5.2869
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g008500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof43.47.4e-1440713363
              zf-Dof 33 CkaC.rryWtkGGalrnvPvGggrrknkksss 63
                         k+C rryWt GG+lrn+P+Gg +rk+kksss
  Sopim08g008500.0.1 40 LKNCpRRYWTDGGSLRNIPIGGVSRKSKKSSS 71
                        5899799*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.6E-93968IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-44164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDTSQWPQGI VVKTMEEMKI PKNTNTRKIR PQQQQNDEAL KNCPRRYWTD GGSLRNIPIG  60
GVSRKSKKSS SINIMKNNII SPKVQDIINN NNNKGVNQDL NLDFSSDFKI ISELIQVPNN  120
NSFMPIMPNI SDPNSIYLFS SNLDHGLIGS SSISDGGYEC NNIIQDLQVC TSTTTSGGIL  180
FPFEDLKQVS NTSEQSRDGE SSTNGYWDVI LGGN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244646.11e-135PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLK4CIY41e-154K4CIY4_SOLLC; Uncharacterized protein
STRINGSolyc08g008500.2.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-11Dof family protein